Publications

@article{Melgar2023c,

title = {A novel semantic segmentation approach based on U-Net, WU-Net, and U-Net++ deep learning for predicting areas sensitive to pluvial flood at tropical area},

author = {L. Melgar-García and F. Martínez-Álvarez and D. T. Bui and A. Troncoso},

url = {https://www.tandfonline.com/doi/full/10.1080/17538947.2023.2252401},

doi = {https://doi.org/10.1080/17538947.2023.2252401},

year  = {2023},

date = {2023-01-01},

journal = {International Journal of Digital Earth},

volume = {16},

number = {1},

pages = {3661-3679},

keywords = {deep learning, natural disasters},

pubstate = {published},

tppubtype = {article}

}

@article{vazquez2022systematic,

title = {A systematic review of the application of machine-learning algorithms in multiple sclerosis},

author = {M. Vázquez-Marrufo and E. Sarrias-Arrabal and M. García-Torres and R. Martín-Clemente and G. Izquierdo},

url = {https://www.sciencedirect.com/science/article/pii/S217358082200075X},

doi = {10.1016/j.nrleng.2020.10.013},

year  = {2023},

date = {2023-01-01},

journal = {Neurología (English Edition)},

publisher = {Elsevier},

abstract = {Introduction: The applications of artificial intelligence, and in particular automatic learning or “machine learning” (ML), constitute both a challenge and a great opportunity in numerous scientific, technical, and clinical disciplines. Specific applications in the study of multiple sclerosis (MS) have been no exception, and constitute an area of increasing interest in recent years. Objective: We present a systematic review of the application of ML algorithms in MS. Materials and methods: We used the PubMed search engine, which allows free access to the MEDLINE medical database, to identify studies including the keywords “machine learning” and “multiple sclerosis.” We excluded review articles, studies written in languages other than English or Spanish, and studies that were mainly technical and did not specifically apply to MS. The final selection included 76 articles, and 38 were rejected. Conclusions: After the review process, we established 4 main applications of ML in MS: 1) classifying MS subtypes; 2) distinguishing patients with MS from healthy controls and individuals with other diseases; 3) predicting progression and response to therapeutic interventions; and 4) other applications. Results found to date have shown that ML algorithms may offer great support for health professionals both in clinical settings and in research into MS.},

keywords = {bioinformatics},

pubstate = {published},

tppubtype = {article}

}

@article{sosa2023feature,

title = {Feature selection: A perspective on inter-attribute cooperation},

author = {G. Sosa-Cabrera and S. Gómez-Guerrero and M. García-Torres and C. E. Schaerer},

url = {https://link.springer.com/article/10.1007/s41060-023-00439-z},

doi = {10.1007/s41060-023-00439-z},

year  = {2023},

date = {2023-01-01},

journal = {International Journal of Data Science and Analytics},

pages = {1--13},

publisher = {Springer},

abstract = {High-dimensional datasets depict a challenge for learning tasks in data mining and machine learning. Feature selection is an effective technique in dealing with dimensionality reduction. It is often an essential data processing step prior to applying a learning algorithm. Over the decades, filter feature selection methods have evolved from simple univariate relevance ranking algorithms to more sophisticated relevance-redundancy trade-offs and to multivariate dependencies-based approaches in recent years. This tendency to capture multivariate dependence aims at obtaining unique information about the class from the intercooperation among features. This paper presents a comprehensive survey of the state-of-the-art work on filter feature selection methods assisted by feature intercooperation, and summarizes the contributions of different approaches found in the literature. Furthermore, current issues and challenges are introduced to identify promising future research and development.},

keywords = {feature selection},

pubstate = {published},

tppubtype = {article}

}

@article{jimenez2023,

title = {Streaming big time series forecasting based on nearest similar patterns with application to energy consumption},

author = {P. Jiménez-Herrera and L. Melgar-García and G. Asencio-Cortés and A. Troncoso},

url = {https://academic.oup.com/jigpal/advance-article-abstract/doi/10.1093/jigpal/jzac017/6534493?redirectedFrom=fulltext},

doi = {https://doi.org/10.1093/jigpal/jzac017},

year  = {2023},

date = {2023-01-01},

journal = {Logic Journal of the IGPL},

volume = {31},

number = {2},

pages = {255-270},

abstract = {This work presents a novel approach to forecast streaming big time series based on nearest similar patterns. This approach combines a clustering algorithm with a classifier and the nearest neighbors algorithm. It presents two separate stages: offline and online. The offline phase is for training and finding the best models for clustering, classification and the nearest neighbors algorithm. The online phase is to predict big time series in real time. In the offline phase, data are divided into clusters and a forecasting model based on the nearest neighbors is trained for each cluster. In addition, a classifier is trained using the cluster assignments previously generated by the clustering algorithm. In the online phase, the classifier predicts the cluster label of an instance, and the proper nearest neighbors model according to the predicted cluster label is applied to obtain the final prediction using the similar patterns. The algorithm is able to be updated incrementally for online learning from data streams. Results are reported using electricity consumption with a granularity of 10 minutes for 4-hour-ahead forecasting and compared with well-known online benchmark learners, showing a remarkable improvement in prediction accuracy.},

keywords = {energy, IoT, time series},

pubstate = {published},

tppubtype = {article}

}

@article{cardozo2023dataset,

title = {Dataset of fundus images for the diagnosis of ocular toxoplasmosis},

author = {O. Cardozo and V. Ojeda and R. Parra and J. C. Mello-Román and J. L. Noguera Vázquez and M. García-Torres and F. Divina and S. Grillo and C. Villalba and J. Facon},

url = {https://www.sciencedirect.com/science/article/pii/S2352340923001749},

doi = {10.1016/j.dib.2023.109056},

year  = {2023},

date = {2023-01-01},

journal = {Data in Brief},

pages = {109056},

publisher = {Elsevier},

abstract = {Toxoplasmosis chorioretinitis is commonly diagnosed by an ophthalmologist through the evaluation of the fundus images of a patient. Early detection of these lesions may help to prevent blindness. In this article we present a data set of fundus images labeled into three categories: healthy eye, inactive and active chorioretinitis. The dataset was developed by three ophthalmologists with expertise in toxoplasmosis detection using fundus images. The dataset will be of great use to researchers working on ophthalmic image analysis using artificial intelligence techniques for the automatic detection of toxoplasmosis chorioretinitis.},

keywords = {bioinformatics},

pubstate = {published},

tppubtype = {article}

}

@article{garcia2023evolutionary,

title = {Evolutionary feature selection on high dimensional data using a search space reduction approach},

author = {M. García-Torres and R. Ruiz and F. Divina},

url = {https://www.sciencedirect.com/science/article/pii/S0952197622005462},

doi = {10.1016/j.engappai.2022.105556},

year  = {2023},

date = {2023-01-01},

journal = {Engineering Applications of Artificial Intelligence},

volume = {117},

pages = {105556},

publisher = {Elsevier},

abstract = {Feature selection is becoming more and more a challenging task due to the increase of the dimensionality of the data. The complexity of the interactions among features and the size of the search space make it unfeasible to find the optimal subset of features. In order to reduce the search space, feature grouping has arisen as an approach that allows to cluster feature according to the shared information about the class. On the other hand, metaheuristic algorithms have proven to achieve sub-optimal solutions within a reasonable time. In this work we propose a Scatter Search (SS) strategy that uses feature grouping to generate an initial population comprised of diverse and high quality solutions. Solutions are then evolved by applying random mechanisms in combination with the feature group structure, with the objective of maintaining during the search a population of good and, at the same time, as diverse as possible solutions. Not only does the proposed strategy provide the best subset of features found but it also reduces the redundancy structure of the data. We test the strategy on high dimensional data from biomedical and text-mining domains. The results are compared with those obtained by other adaptations of SS and other popular strategies. Results show that the proposed strategy can find, on average, the smallest subsets of features without degrading the performance of the classifier.},

keywords = {big data, feature selection},

pubstate = {published},

tppubtype = {article}

}

@article{collaboration2022gaia,

title = {Gaia Data Release 3: Mapping the asymmetric disc of the Milky Way},

author = {Gaia Collaboration},

url = {https://www.aanda.org/component/article?access=doi&doi=10.1051/0004-6361/202243797},

doi = {10.1051/0004-6361/202243797},

year  = {2023},

date = {2023-01-01},

journal = {Astronomy and Astrophysics},

abstract = {With the most recent Gaia data release the number of sources with complete 6D phase space information (position and velocity) has increased to well over 33 million stars, while stellar astrophysical parameters are provided for more than 470 million sources, in addition to the identification of over 11 million variable stars. Using the astrophysical parameters and variability classifications provided in Gaia DR3, we select various stellar populations to explore and identify non-axisymmetric features in the disc of the Milky Way in both configuration and velocity space. Using more about 580 thousand sources identified as hot OB stars, together with 988 known open clusters younger than 100 million years, we map the spiral structure associated with star formation 4-5 kpc from the Sun. We select over 2800 Classical Cepheids younger than 200 million years, which show spiral features extending as far as 10 kpc from the Sun in the outer disc. We also identify more than 8.7 million sources on the red giant branch (RGB), of which 5.7 million have line-of-sight velocities, allowing the velocity field of the Milky Way to be mapped as far as 8 kpc from the Sun, including the inner disc. The spiral structure revealed by the young populations is consistent with recent results using Gaia EDR3 astrometry and source lists based on near infrared photometry, showing the Local (Orion) arm to be at least 8 kpc long, and an outer arm consistent with what is seen in HI surveys, which seems to be a continuation of the Perseus arm into the third quadrant. Meanwhile, the subset of RGB stars with velocities clearly reveals the large scale kinematic signature of the bar in the inner disc, as well as evidence of streaming motions in the outer disc that might be associated with spiral arms or bar resonances. (abridged)},

keywords = {astrostatistics},

pubstate = {accepted},

tppubtype = {article}

}

@article{Melgar2023b,

title = {Identifying novelties and anomalies for incremental learning in streaming time series forecasting},

author = {L. Melgar-García and D. Gutiérrez-Avilés and C. Rubio-Escudero and A.Troncoso},

url = {https://www.sciencedirect.com/science/article/pii/S0952197623005109},

doi = {https://doi.org/10.1016/j.engappai.2023.106326},

year  = {2023},

date = {2023-01-01},

journal = {Engineering Applications of Artificial Intelligence},

volume = {123},

pages = {106326},

keywords = {energy, IoT, time series},

pubstate = {published},

tppubtype = {article}

}

@article{Melgar2023a,

title = {A novel distributed forecasting method based on information fusion and incremental learning for streaming time series},

author = {L. Melgar-García and D. Gutiérrez-Avilés and C. Rubio-Escudero and A. Troncoso},

url = {https://www.sciencedirect.com/science/article/pii/S1566253523000635},

doi = {https://doi.org/10.1016/j.inffus.2023.02.023},

year  = {2023},

date = {2023-01-01},

journal = {Information Fusion},

volume = {95},

pages = {163-173},

keywords = {energy, IoT, time series},

pubstate = {published},

tppubtype = {article}

}

@article{Chacon2023,

title = {FS-Studio: An extensive and efficient feature selection experimentation tool for Weka Explorer},

author = {A. M. Chacón-Maldonado and G. Asencio-Cortés and F. Martínez-Álvarez and A. Troncoso},

url = {https://www.sciencedirect.com/science/article/pii/S2352711023000973},

doi = {https://doi.org/10.1016/j.softx.2023.101401},

year  = {2023},

date = {2023-01-01},

journal = {SoftwareX},

volume = {23},

pages = {101401},

keywords = {feature selection},

pubstate = {published},

tppubtype = {article}

}

@article{MOLINA22,

title = {DIAFAN-TL: An instance weighting-based transfer learning algorithm with application to phenology forecasting},

author = {M. Á. Molina and M. J. Jiménez-Navarro and R. Arjona and F. Mártinez-Álvarez and G. Asencio-Cortés},

url = {https://www.sciencedirect.com/science/article/pii/S0950705122008322},

doi = {https://doi.org/10.1016/j.knosys.2022.109644},

year  = {2022},

date = {2022-10-22},

journal = {Knowledge-Based Systems},

volume = {254},

pages = {109644},

abstract = {The agricultural sector has been, and still is, the most important economic sector in many countries. Due to advances in technology, the amount and variety of available data have been increasing over the years. However, compared to other economic sectors, there is not always enough quality data for one particular domain (crops, plantations, plots) to obtain acceptable forecasting results with machine learning algorithms. In this context, transfer learning can help extract knowledge from different but related domains with enough data to transfer it to a target domain with scarce data. This process can overcome forecasting accuracy compared to training models uniquely with data from the target domain. In this work, a novel instance weighting-based transfer learning algorithm is proposed and applied to the phenology forecasting problem. A new metric named DIAFAN is proposed to weight samples from different source domains according to their relationship with the target domain, promoting the diversity of the information and avoiding inconsistent samples. Additionally, a set of validation schemes is specifically designed to ensure fair comparisons in terms of data volume with other benchmark transfer learning algorithms. The proposed algorithm, DIAFAN-TL, is tested with a proposed dataset of 16 plots of olive groves from different places, including information fusion from satellite images, meteorological stations and human field sampling of crop phenology. DIAFAN-TL achieves a remarkable improvement with respect to 15 other well-known transfer learning algorithms and three nontransfer learning scenarios. Finally, several performance analyses according to the different phenological states, prediction horizons and source domains are also performed.},

keywords = {time series, transfer learning},

pubstate = {published},

tppubtype = {article}

}

@article{HADJOUT22,

title = {Electricity consumption forecasting based on ensemble deep learning with application to the Algerian market},

author = {D. Hadjout and J. F. Torres and A. Troncoso and A. Sebaa and F. Martínez-Álvarez},

url = {https://www.sciencedirect.com/science/article/pii/S0360544221033090},

doi = {https://doi.org/10.1016/j.energy.2021.123060},

year  = {2022},

date = {2022-03-15},

journal = {Energy},

volume = {243},

pages = {123060},

abstract = {The economic sector is one of the most important pillars of countries. Economic activities of industry are intimately linked with the ability to meet their needs for electricity. Therefore, electricity forecasting is a very important task. It allows for better planning and management of energy resources. Several methods have been proposed to forecast energy consumption. In this work, to predict monthly electricity consumption for the economic sector, we develop a novel approach based on ensemble learning. Our approach combines three models that proved successful in the field, namely: Long Short Term Memory and Gated Recurrent Unit neural networks, and Temporal Convolutional Networks. The experiments have been conducted with almost 2000 clients and 14 years of monthly electricity consumption from Bejaia, Algeria. The results show that the proposed ensemble models achieve better performance than both the company's requirements and the prediction of the traditional individual models. Finally, statistical tests have been carried out to prove that significance of the ensemble models developed.},

keywords = {deep learning, energy, time series},

pubstate = {published},

tppubtype = {article}

}

@article{MARTINEZ22b,

title = {Special issue SOCO-CISIS 2019-IGPL},

author = {F. Martínez-Álvarez and A. Troncoso and H. Quintián and E. Corchado},

url = {https://doi.org/10.1093/jigpal/jzaa066},

doi = {https://doi.org/10.1093/jigpal/jzaa066},

year  = {2022},

date = {2022-03-10},

journal = {Logig Journal of the IGPL},

volume = {30},

number = {2},

pages = {211-213},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{TORRES22b,

title = {A deep LSTM network for the Spanish electricity consumption forecasting},

author = {J. F. Torres and F. Martínez-Álvarez and A. Troncoso},

url = {https://link.springer.com/article/10.1007/s00521-021-06773-2},

doi = {https://doi.org/10.1007/s00521-021-06773-2},

year  = {2022},

date = {2022-02-05},

journal = {Neural Computing and Applications},

volume = {34},

pages = {10533-10545},

abstract = {Nowadays, electricity is a basic commodity necessary for the well-being of any modern society. Due to the growth in electricity consumption in recent years, mainly in large cities, electricity forecasting is key to the management of an efficient, sustainable and safe smart grid for the consumer. In this work, a deep neural network is proposed to address the electricity consumption forecasting in the short-term, namely, a long short-term memory (LSTM) network due to its ability to deal with sequential data such as time-series data. First, the optimal values for certain hyper-parameters have been obtained by a random search and a metaheuristic, called coronavirus optimization algorithm (CVOA), based on the propagation of the SARS-Cov-2 virus. Then, the optimal LSTM has been applied to predict the electricity demand with 4-h forecast horizon. Results using Spanish electricity data during nine years and half measured with 10-min frequency are presented and discussed. Finally, the performance of the proposed LSTM using random search and the LSTM using CVOA is compared, on the one hand, with that of recently published deep neural networks (such as a deep feed-forward neural network optimized with a grid search) and temporal fusion transformers optimized with a sampling algorithm, and, on the other hand, with traditional machine learning techniques, such as a linear regression, decision trees and tree-based ensemble techniques (gradient-boosted trees and random forest), achieving the smallest prediction error below 1.5%.},

keywords = {deep learning, energy},

pubstate = {published},

tppubtype = {article}

}

@article{MARTINEZ22,

title = {Special Issue SOCO 2019: New trends in soft computing and its application in industrial and environmental problems},

author = {F. Martínez-Álvarez and A. Troncoso and H. Quintián and E. Corchado},

url = {https://www.sciencedirect.com/science/article/abs/pii/S0925231221001399},

doi = {https://doi.org/10.1016/j.neucom.2021.01.071},

year  = {2022},

date = {2022-01-22},

journal = {Neurocomputing},

volume = {470},

pages = {278-279},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{losada2022,

title = {Automatic Eligibility of Sellers in an Online Marketplace: A Case Study of Amazon Algorithm},

author = {A. Gómez-Losada and G. Asencio-Cortés and N. Duch-Brown},

url = {https://www.mdpi.com/2078-2489/13/2/44},

doi = {10.3390/info13020044},

year  = {2022},

date = {2022-01-01},

journal = {Information},

volume = {13},

number = {44},

pages = {1--16},

abstract = {Purchase processes on Amazon Marketplace begin at the Buy Box, which represents the buy click process through which numerous sellers compete. This study aimed to estimate empirically the relevant seller characteristics that Amazon could consider featuring in the Buy Box. To that end, 22 product categories from Italy’s Amazon web page were studied over a ten-month period, and the sellers were analyzed through their products featured in the Buy Box. Two different experiments were proposed and the results were analyzed using four classification algorithms (a neural network, random forest, support vector machine, and C5.0 decision trees) and a rule-based classification. The first experiment aimed to characterize sellers unspecifically by predicting their change at the Buy Box. The second one aimed to predict which seller would be featured in it. Both experiments revealed that the customer experience and the dynamics of the sellers’ prices were important features of the Buy Box. Additionally, we proposed a set of default features that Amazon could consider when no information about sellers was available. We also proposed the possible existence of a relationship or composition among important features that could be used for sellers to be featured in the Buy Box.},

keywords = {feature selection, time series},

pubstate = {published},

tppubtype = {article}

}

@article{castan2022,

title = {A new hybrid method for predicting univariate and multivariate time series based on pattern forecasting},

author = {M.A. Castán-Lascorz and P. Jiménez-Herrera and A. Troncoso and G. Asencio-Cortés},

url = {https://www.sciencedirect.com/science/article/pii/S0020025521012226?via%3Dihub},

doi = {10.1016/j.ins.2021.12.001},

year  = {2022},

date = {2022-01-01},

journal = {Information Sciences},

volume = {586},

pages = {611--627},

abstract = {Time series forecasting has become indispensable for multiple applications and industrial processes. Currently, a large number of algorithms have been developed to forecast time series, all of which are suitable depending on the characteristics and patterns to be inferred in each case. In this work, a new algorithm is proposed to predict both univariate and multivariate time series based on a combination of clustering, classification and forecasting techniques. The main goal of the proposed algorithm is first to group windows of time series values with similar patterns by applying a clustering process. Then, a specific forecasting model for each pattern is built and training is only conducted with the time windows corresponding to that pattern. The new algorithm has been designed using a flexible framework that allows the model to be generated using any combination of approaches within multiple machine learning techniques. To evaluate the model, several experiments are carried out using different configurations of the clustering, classification and forecasting methods that the model consists of. The results are analyzed and compared to classical prediction models, such as autoregressive, integrated, moving average and Holt-Winters models, to very recent forecasting methods, including deep, long short-term memory neural networks, and to well-known methods in the literature, such as k nearest neighbors, classification and regression trees, as well as random forest.},

keywords = {energy, pattern recognition, time series},

pubstate = {published},

tppubtype = {article}

}

@article{velazquez2022distribution,

title = {Distribution level Electric current consumption and meteorological data set of the East region of Paraguay},

author = {G. Velázquez and F. Morales and M. García-Torres and F. Gómez-Vela and F. Divina and J.L. Vázquez Noguera and F. Daumas-Ladouce and C. Ayala and D. Pinto-Roaand P. Gardel-Sotomayor},

url = {https://www.sciencedirect.com/science/article/pii/S2352340921009744},

doi = {10.1016/j.dib.2021.107699},

year  = {2022},

date = {2022-01-01},

journal = {Data in Brief},

volume = {40},

pages = {107699},

publisher = {Elsevier pubstate = published},

abstract = {This paper presents a data set with information on meteorological data and electricity consumption in the department of Alto Paraná, Paraguay. The meteorological data were registered every three hours at the Aeropuerto Guarani, Department of Alto Paraná, which belongs to the Dirección Nacional de Aeronáutica Civil of Paraguay. The final data consists of a total of 22.445 records of temperature, relative humidity, wind speed and atmospheric pressure. On the other hand, the electrical energy consumption data set contains a total of 1.848.947 records, all of them coming from the one hundred and fifteen feeders located throughout the Alto Paraná region of Paraguay. Electrical energy consumption data was provided by Administración Nacional de Electricidad (ANDE). The analysis of this data can yield insights regarding the energy consumption in the area.},

keywords = {energy, time series},

pubstate = {published},

tppubtype = {article}

}

@article{gomez2022measuring,

title = {Measuring Interactions in Categorical Datasets Using Multivariate Symmetrical Uncertainty},

author = {S. Gómez-Guerrero and I. Ortiz and G. and Sosa-Cabrera and M. García-Torres and C.E. Schaerer},

url = {https://www.mdpi.com/1099-4300/24/1/64},

doi = {10.3390/e24010064},

year  = {2022},

date = {2022-01-01},

journal = {Entropy},

volume = {24},

number = {1},

pages = {64},

publisher = {Multidisciplinary Digital Publishing Institute},

abstract = {Interaction between variables is often found in statistical models, and it is usually expressed in the model as an additional term when the variables are numeric. However, when the variables are categorical (also known as nominal or qualitative) or mixed numerical-categorical, defining, detecting, and measuring interactions is not a simple task. In this work, based on an entropy-based correlation measure for n nominal variables (named as Multivariate Symmetrical Uncertainty (MSU)), we propose a formal and broader definition for the interaction of the variables. Two series of experiments are presented. In the first series, we observe that datasets where some record types or combinations of categories are absent, forming patterns of records, which often display interactions among their attributes. In the second series, the interaction/non-interaction behavior of a regression model (entirely built on continuous variables) gets successfully replicated under a discretized version of the dataset. It is shown that there is an interaction-wise correspondence between the continuous and the discretized versions of the dataset. Hence, we demonstrate that the proposed definition of interaction enabled by the MSU is a valuable tool for detecting and measuring interactions within linear and non-linear models.},

keywords = {feature selection},

pubstate = {published},

tppubtype = {article}

}

@article{MELGAR21_NEUCOMb,

title = {A new big data triclustering approach for extracting three-dimensional patterns in precision agriculture},

author = {L. Melgar-García and D. Gutiérrez-Avilés and M. T. Godinho and R. Espada and I. S. Brito and F. Martínez-Álvarez and A. Troncoso and C. Rubio-Escudero},

url = {https://www.sciencedirect.com/science/article/abs/pii/S0925231222006415},

doi = {https://doi.org/10.1016/j.neucom.2021.06.101},

year  = {2022},

date = {2022-01-01},

journal = {Neurocomputing},

volume = {500},

pages = {268-278},

abstract = {Precision agriculture focuses on the development of site-specific harvest considering the variability of each crop area. Vegetation indices allow the study and delineation of different characteristics of each field zone, generally invisible to the naked-eye. This paper introduces a new big data triclustering approach based on evolutionary algorithms. The algorithm shows its capability to discover three-dimensional patterns on the basis of vegetation indices from vine crops. Different vegetation indices have been tested to find different patterns in the crops. The results reported using a vineyard crop located in Portugal depicts four areas with different moisture stress particularities that can lead to changes in the management of the vineyard. Furthermore, scalability studies have been performed, showing that the proposed algorithm is suitable for dealing with big datasets.},

keywords = {big data, pattern recognition},

pubstate = {published},

tppubtype = {article}

}

@article{delgado2022data,

title = {Data of transcriptional effects of the merbarone-mediated inhibition of TOP2},

author = {F. Delgado-Chaves and P. M. Martínez-García and A. Herrero-Ruiz and F. Gómez-Vela and F. Divina and S. Jimeno-González and F. Cortés-Ledesma},

url = {https://www.sciencedirect.com/science/article/pii/S235234092200693X},

doi = {10.1016/j.dib.2022.108499},

year  = {2022},

date = {2022-01-01},

journal = {Data in Brief},

volume = {44},

pages = {108499},

publisher = {Elsevier},

abstract = {Type II DNA topoisomerases relax topological stress by transiently gating DNA passage in a controlled cut-and-reseal mechanism that affects both DNA strands. Therefore, they are essential to overcome topological problems associated with DNA metabolism. Their aberrant activity results in the generation of DNA double-strand breaks, which can seriously compromise cell survival and genome integrity. Here, we profile the transcriptome of human-telomerase-immortalized retinal pigment epithelial 1 (RPE-1) cells when treated with merbarone, a drug that catalytically inhibits type II DNA topoisomerases. We performed RNA-Seq after 4 and 8 h of merbarone treatment and compared transcriptional profiles versus untreated samples. We report raw sequencing data together with lists of gene counts and differentially expressed genes.},

keywords = {bioinformatics},

pubstate = {published},

tppubtype = {article}

}

@article{morales2022analysisb,

title = {Analysis of Electric Energy Consumption Profiles Using a Machine Learning Approach: A Paraguayan Case Study},

author = {F. Morales and M. García-Torres and G. Velázquez and F. Daumas-Ladouce and P. Gardel-Sotomayor and F. Gómez-Vela and F. Divina and J. L. Vázquez Noguera and C. Sauer Ayala and D. Pinto-Roa},

url = {https://www.mdpi.com/2079-9292/11/2/267},

doi = {10.3390/electronics11020267},

year  = {2022},

date = {2022-01-01},

journal = {Electronics},

volume = {11},

number = {2},

pages = {267},

abstract = {Correctly defining and grouping electrical feeders is of great importance for electrical system operators. In this paper, we compare two different clustering techniques, K-means and hierarchical agglomerative clustering, applied to real data from the east region of Paraguay. The raw data were pre-processed, resulting in four data sets, namely, (i) a weekly feeder demand, (ii) a monthly feeder demand, (iii) a statistical feature set extracted from the original data and (iv) a seasonal and daily consumption feature set obtained considering the characteristics of the Paraguayan load curve. Considering the four data sets, two clustering algorithms, two distance metrics and five linkage criteria a total of 36 models with the Silhouette, Davies–Bouldin and Calinski–Harabasz index scores was assessed. The K-means algorithms with the seasonal feature data sets showed the best performance considering the Silhouette, Calinski–Harabasz and Davies–Bouldin validation index scores with a configuration of six clusters.},

keywords = {big data, energy, time series},

pubstate = {published},

tppubtype = {article}

}

@article{mugariri2022promoting,

title = {Promoting Information Privacy Protection Awareness for Internet of Things (IoT)},

author = {P. Mugariri and H. Abdullah and M. García-Torres and B.D. Parameshchari and K.N. Abdul-Sattar},

url = {https://www.hindawi.com/journals/misy/2022/4247651/},

doi = {10.1155/2022/4247651},

year  = {2022},

date = {2022-01-01},

journal = {Mobile Information Systems},

volume = {2022},

pages = {1--11},

abstract = {The Internet of Things (IoT) has had a considerable influence on our daily lives by enabling enhanced connection of devices, systems, and services that extends beyond machine-to-machine interactions and encompasses a wide range of protocols, domains, and applications. However, despite privacy concerns shown by IoT users, little has been done to reduce and protect individual information exposure. It is extremely difficult to mitigate IoT devices from reidentification threats which is why it is still a major challenge for IoT users to securely protect their information. The trust controls how we regulate privacy in our IoT platforms in the same way that it governs personal relationships. As IoT devices become increasingly linked, more data is shared across individuals, businesses, governments, and ecosystems. Technologies, sensors, machines, data, and cloud connections all rely largely on trust relationships that have been formed. With the rapid growth of additional types of IoT devices that are being introduced, it, therefore, expands privacy concerns and is difficult to develop trust with an IoT system or device without the option to regulate information privacy settings. Privacy has always been a barrier for many devices as they race for the early adoption of IoT technologies. Several Internet of Things devices or systems will continue to pose privacy threats. As a result, the main objective of this study was to examine the individual understanding of privacy and to promote information privacy protection awareness not only to IoT users but also to organizations that use IoT devices or platforms to run their day-to-day business operations. Furthermore, the objective extends to compare user knowledge and concerns about IoT privacy, as well as to identify any common attitudes and variances. However, in terms of enhancing individuals’ knowledge, an artifact was developed to educate and enhance information privacy awareness among IoT users. A pre- and postquestionnaire was generated to test and validate user knowledge regarding information privacy protection in IoT. The study was conducted using a quantitative research method. Findings indicate that IoT users’ awareness of information privacy protection turned out to be average, suggesting a need for education and awareness. Several participants stated that information privacy protection awareness is required within the community to educate, raise awareness, eliminate human error, and enable individuals to be conscious of their privacy when surfing the Internet.},

keywords = {IoT},

pubstate = {published},

tppubtype = {article}

}

@article{aquino2022automatic,

title = {Automatic Diagnosis of Diabetic Retinopathy from Fundus Images Using Neuro-Evolutionary Algorithms},

author = {D. Aquino-Brítez and J.A. Gómez and J.L. Vázquez Noguera and M. García-Torres and J.C. Mello Román and P.E. Gardel-Sotomayor and V.E. Castillo Benitez and I. Castro Matto and D.P. Pinto-Roa and J. Facon and S.A. Grillo},

doi = {10.3233/SHTI220166},

year  = {2022},

date = {2022-01-01},

journal = {Studies in Health Technology and Informatics},

volume = {290},

pages = {689--693},

abstract = {Due to the presence of high glucose levels, diabetes mellitus (DM) is a widespread disease that can damage blood vessels in the retina and lead to loss of the visual system. To combat this disease, called Diabetic Retinopathy (DR), retinography, using images of the fundus of the retina, is the most used method for the diagnosis of Diabetic Retinopathy. The Deep Learning (DL) area achieved high performance for the classification of retinal images and even achieved almost the same human performance in diagnostic tasks. However, the performance of DL architectures is highly dependent on the optimal configuration of the hyperparameters. In this article, we propose the use of Neuroevolutionary Algorithms to optimize the hyperparameters corresponding to the DL model for the diagnosis of DR. The results obtained prove that the proposed method outperforms the results obtained by the classical approach.},

keywords = {bioinformatics},

pubstate = {published},

tppubtype = {article}

}

@article{klioner2022gaia,

title = {Gaia Early Data Release 3-The celestial reference frame (Gaia-CRF3)},

author = {Gaia collaboration},

url = {https://www.aanda.org/articles/aa/abs/2022/11/aa43483-22/aa43483-22.html},

doi = {10.1051/0004-6361/202243483},

year  = {2022},

date = {2022-01-01},

journal = {Astronomy & Astrophysics},

volume = {667},

number = {A148},

pages = {A148},

abstract = {Gaia-CRF3 is the celestial reference frame for positions and proper motions in the third release of data from the Gaia mission, Gaia DR3 (and for the early third release, Gaia EDR3, which contains identical astrometric results). The reference frame is defined by the positions and proper motions at epoch 2016.0 for a specific set of extragalactic sources in the (E)DR3 catalogue. Aims. We describe the construction of Gaia-CRF3 and its properties in terms of the distributions in magnitude, colour, and astrometric quality. Methods. Compact extragalactic sources in Gaia DR3 were identified by positional cross-matching with 17 external catalogues of quasi-stellar objects (QSO) and active galactic nuclei (AGN), followed by astrometric filtering designed to remove stellar contaminants. Selecting a clean sample was favoured over including a higher number of extragalactic sources. For the final sample, the random and systematic errors in the proper motions are analysed, as well as the radio-optical offsets in position for sources in the third realisation of the International Celestial Reference Frame (ICRF3). Results. Gaia-CRF3 comprises about 1.6 million QSO-like sources, of which 1.2 million have five-parameter astrometric solutions in Gaia DR3 and 0.4 million have six-parameter solutions. The sources span the magnitude range G = 13–21 with a peak density at 20.6 mag, at which the typical positional uncertainty is about 1 mas. The proper motions show systematic errors on the level of 12 µas yr–1 on angular scales greater than 15 deg. For the 3142 optical counterparts of ICRF3 sources in the S/X frequency bands, the median offset from the radio positions is about 0.5 mas, but it exceeds 4 mas in either coordinate for 127 sources. We outline the future of Gaia-CRF in the next Gaia data releases. Appendices give further details on the external catalogues used, how to extract information about the Gaia-CRF3 sources, potential (Galactic) confusion sources, and the estimation of the spin and orientation of an astrometric solution.},

keywords = {astrostatistics},

pubstate = {published},

tppubtype = {article}

}

@article{vallenari2022gaia,

title = {Gaia Data Release 3. Summary of the content and survey properties},

author = {Gaia Collaboration},

url = {https://www.aanda.org/component/article?access=doi&doi=10.1051/0004-6361/202243940},

doi = {10.1051/0004-6361/202243940},

year  = {2022},

date = {2022-01-01},

journal = {Astronomy & Astrophysics},

abstract = {We present the third data release of the European Space Agency’s Gaia mission, Gaia DR3. This release includes a large variety of new data products, notably a much expanded radial velocity survey and a very extensive astrophysical characterisation of Gaia sources. Aims. We outline the content and the properties of Gaia DR3, providing an overview of the main improvements in the data processing in compar- ison with previous data releases (where applicable) and a brief discussion of the limitations of the data in this release. Methods. The Gaia DR3 catalogue is the outcome of the processing of raw data collected with the Gaia instruments during the first 34 months of the mission by the Gaia Data Processing and Analysis Consortium. Results. The Gaia DR3 catalogue contains the same source list, celestial positions, proper motions, parallaxes, and broad band photometry in the G, GBP, and GRP pass-bands already present in the Early Third Data Release, Gaia EDR3. Gaia DR3 introduces an impressive wealth of new data products. More than 33 million objects in the ranges GRVS < 14 and 3100 < Teff < 14500, have new determinations of their mean radial velocities based on data collected by Gaia. We provide GRVS magnitudes for most sources with radial velocities, and a line broadening parameter is listed for a subset of these. Mean Gaia spectra are made available to the community. The Gaia DR3 catalogue includes about 1 million mean spectra from the radial velocity spectrometer, and about 220 million low-resolution blue and red prism photometer BP/RP mean spectra. The results of the analysis of epoch photometry are provided for some 10 million sources across 24 variability types. Gaia DR3 includes astrophysical parameters and source class probabilities for about 470 million and 1500 million sources, respectively, including stars, galaxies, and quasars. Orbital elements and trend parameters are provided for some 800 000 astrometric, spectroscopic and eclipsing binaries. More than 150 000 Solar System objects, including new discoveries, with preliminary orbital solutions and individual epoch observations are part of this release. Reflectance spectra derived from the epoch BP/RP spectral data are published for about 60 000 asteroids. Finally, an additional data set is provided, namely the Gaia Andromeda Photometric Survey, consisting of the photometric time series for all sources located in a 5.5 degree radius field centred on the Andromeda galaxy. Conclusions. This data release represents a major advance with respect to Gaia DR2 and Gaia EDR3 because of the unprecedented quantity, quality, and variety of source astrophysical data. To date this is the largest collection of all-sky spectrophotometry, radial velocities, variables, and astrophysical parameters derived from both low- and high-resolution spectra and includes a spectrophotometric and dynamical survey of SSOs of the highest accuracy. The non-single star content surpasses the existing data by orders of magnitude. The quasar host and galaxy light profile collection is the first such survey that is all sky and space based. The astrophysical information provided in Gaia DR3 will unleash the full potential of Gaia’s exquisite astrometric, photometric, and radial velocity surveys.},

keywords = {astrostatistics},

pubstate = {published},

tppubtype = {article}

}

@article{BUI22b,

title = {Deformation forecasting of a hydropower dam by hybridizing a Long Short-Term Memory deep learning network with the Coronavirus Optimization Algorithm},

author = {K.-T. T. Bui and J. F. Torres and D. Gutiérrez-Avilés and V. H. Nhu and F. Martínez-Álvarez and D. T. Bui},

url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/mice.12810},

doi = {https://doi.org/10.1111/mice.12810},

year  = {2021},

date = {2021-11-24},

journal = {Computer-Aided Civil and Infrastructure Engineering},

volume = {37},

pages = {1368-1386},

abstract = {The safety operation and management of hydropower dam play a critical role in social-economic development and ensure people's safety in many countries; therefore, modeling and forecasting the hydropower dam's deformations with high accuracy is crucial. This research aims to propose and validate a new model based on deep learning long short-term memory (LSTM) and the coronavirus optimization algorithm (CVOA), named CVOA-LSTM, for forecasting the deformations of the hydropower dam. The second-largest hydropower dam of Vietnam, located in the Hoa Binh province, is focused. Herein, we used the LSTM to establish the deformation model, whereas the CVOA was utilized to optimize the three parameters of the LSTM, the number of hidden layers, the learning rate, and the dropout. The efficacy of the proposed CVOA-LSTM model is assessed by comparing its forecasting performance with state-of-the-art benchmarks, sequential minimal optimization for support vector regression, Gaussian process, M5' model tree, multilayer perceptron neural network, reduced error pruning tree, random tree, random forest, and radial basis function neural network. The result shows that the proposed CVOA-LSTM model has high forecasting capability (R2 = 0.874, root mean square error = 0.34, mean absolute error = 0.23) and outperforms the benchmarks. We conclude that CVOA-LSTM is a new tool that can be considered to forecast the hydropower dam's deformations.},

keywords = {deep learning, time series},

pubstate = {published},

tppubtype = {article}

}

@article{MORALES21,

title = {Mahalanobis clustering for the determination of incidence-magnitude seismic parameters for the Iberian Peninsula and the Republic of Croatia},

author = {A. Morales-Esteban and F. Martínez-Álvarez and S. Scitovski and R. Scitovski},

url = {https://www.sciencedirect.com/science/article/pii/S0098300421001667},

doi = {https://doi.org/10.1016/j.cageo.2021.104873},

year  = {2021},

date = {2021-07-09},

journal = {Computers and Geosciences},

volume = {156},

pages = {104873},

abstract = {The aim of this paper is to analyse the seismic activity of the Iberian Peninsula and a wide area of the Republicof Croatia. To do so, two incidence-magnitude seismic parameters have been defined. First, the areas have beendivided into several ellipsoidal clusters using Mahalanobis clustering. Four generalised indexes (Mahalanobis Calinski Harabasz, Mahalanobis Davies–Bouldin, Mahalanobis Simplified Silhouette Width Criterion and Mahalanobis Area) have been used to determine the most appropriate number of ellipsoidal clusters, on the basis of which a partition with four and a partition with eleven clusters have been considered. For the widearea of the Republic of Croatia there are fourteen clusters and the five areas that just affect Croatia have been analysed in detail. Then, to analyse the seismic activity of the areas, two incidence-magnitude seismic parameters have been defined and calculated: a) 𝛥(4), that represents the minimal number of successive years in which at least one earthquake of magnitude between 4 and 5 has been registered; b) 𝛥(5), that shows the number of years in which at least one earthquake of magnitude larger than 5 occurred. The calculation of 𝛥(4) for the South-west and the South-east of the Iberian Peninsula has provided two years for both. Regarding 𝛥(5), 10 and 12 years have been obtained for the South-west and the South-east of the Iberian Peninsula,respectively. The analysis of Croatia has shown that the Ston–Metković area has the highest seismic activity. The following results have been determined: 5 years for 𝛥(4) and 22 for 𝛥(5). It should be mentioned that the seresults cannot be used for predicting earthquakes. However, data about the incidences of earthquake events and their magnitudes can certainly serve as useful information in civil engineering.},

keywords = {natural disasters, pattern recognition},

pubstate = {published},

tppubtype = {article}

}